Mylan Inc. (MYL) swung to a third-quarter loss, weighed down by litigation and acquisition-related expenses, as its core operational performance exceeded Wall Street expectations.

The Pittsburgh generic drug maker cut costs in the quarter and cited higher volumes, market growth, and new product launches for its growth, prompting it to again boost its full-year earnings projections.

Mylan shares recently rose 4.6% to $16.50 and have more than doubled in the past year.

"We view Mylan's strong 3Q results as a continued indication of the company's improving underlying profitability," said JPMorgan analyst Chris Schott in a note to clients.

He noted the results were impressive as they didn't include a substantial contribution from a generic version of Abbott Laboratories' (ABT) anti-epilepsy drug Depakote ER. Mylan had 180-day exclusivity to sell the generic and launched Feb. 2.

Looking forward, the company now sees 2009 earnings, excluding items, of $1.24 to $1.28 a share, well above the current analyst view of $1.17 a share, according to Thomson Reuters.

Mylan has steadily increased its earnings guidance throughout the year - in February it projected 90 cents to $1.10 a share - and last projected $1.13 to $1.20.

Wall Street has been eager to get more information on 2010 guidance, and Mylan's Chairman and Chief Executive Robert Coury said in a statement that "we are confident that this momentum will continue into 2010 and enable us to once again deliver the revenue and earnings performance growth that we envision."

That level implies fourth-quarter earnings of 27 cents to 31 cents a share, excluding items, which is above the average analyst estimate of 25 cents a share.

In a conference call Thursday, the company said it has 125 generic product applications awaiting Food and Drug Administration approval, covering annual branded sales of over $86 billion.

Of those filings, the company said 36 are potential first-to-file opportunities - providing 180-day market exclusivity - covering about $19 billion in branded sales.

In the three months ended Sept. 30, Mylan swung to a loss of $40 million, or 13 cents a share, from year-earlier profit of $182.4 million, or 47 cents a share. The latest quarter includes acquisition-related expenses and litigation charge including a settlement related to allegations it underpaid rebates to Medicaid.

Excluding items, earnings were 32 cents a share, well above analyst expectations of 27 cents a share.

Revenue dropped 24% to $1.26 billion, but that also beat Street expectations of $1.23 billion.

The top-line drop came from a 2008 revenue gain of $455 million from selling of product rights to hypertension drug Bystolic, which Mylan co-developed with Forest Laboratories Inc. (FRX). Excluding this gain, total revenue rose by $62.2 million, or 5.2%, over the year-ago period.

Excluding foreign-exchange impacts, revenue excluding the gain rose 9%.

Generics revenue rose 3.7% to $1.12 billion, with North America seeing a 9.2% increase to $502.5 million.

Interest expense in the quarter dropped to $77 million from $93.5 million a year ago, as it cut its debt and overall interest rates. The company is carrying $5.1 billion in long-term debt on its balance sheet, mainly from the $6.7 billion purchase of Merck KGaA's (MRK.XE) generics business in 2007.

Last month, Standard & Poor's Ratings Services raised Mylan's ratings closer to investment grade, citing the company's successful integration of those operations and a view that increasing cash flows will be used to repay debt.

-By Thomas Gryta, Dow Jones Newswires; 212-416-2169; thomas.gryta@dowjones.com